報告時間：2018年5月25日—6月22日，上午8:30-11.30

報告地點：主西515

報告題目：

（1）5月25日Gene expression data analysis: RNA-seq，DEG identification,?Multiple testing corrections (基因表达数据分析：RNA-seq数据分析，差异基因分辨，多重比力）

（2）6月1日Public biological databases and experimental design（生物数据库和实验设计）

（3）6月8日Coexpression network and coordination network（共表达网络和配合协调网络）

（4）6月15日Construction of multilayered gene regulatory network（多条理基因调控网络构建）

（5）6月22日Basic Unix skills and BLAST(Unix基础和BLAST分析）

報告人簡介：

卫海荣博士，密歇根理工大学森林资源与情况学院与生命科学与技术学院教授，主要从事系统生物学、分子生物学和植物育种学研究。当前主要研究（1）经由基因网络构建和拆解对控制庞大性状的基因识别与判定（2）控制木质纤维基质生物合成的基因网络构建（3） 生物信息学工具与软件开发（4）基因组组装与注释。

部门發表的論文：

1、Hairong Wei, Construction of a Hierarchical Gene Regulatory Network Centred around a Transcription Factor (Review).?Briefing in Bioinformatics (IF =8.8).?(Resubmitted on Oct 11, 2017 after a revision)?

2、Chathura Gunasekara, Jialin Lei, Joshua Marshall, Avinash Subramanian, Guiliang Tang and Hairong Wei* TF-Miner: Web-based Transcription Factor Mining Tools for Identifying Regulatory Genes Controlling a Biological Pathway, Process or Complex Trait Using High-throughput Gene Expression Data.?BMC Genomics (IF =4.0) (Resubmitted on Sept 12, 2017 after a revision)

3、Zhengxiang Liu 1*, Jianfeng Zhu 1, Xiuyan Yang 1, Haiwen Wu1, Qi Wei2, Hairong Wei3, Huaxin Zhang 1*。Growth performance, ion organ-level relations and osmotic regulation of Elaeagnus angustifolia in response to salt stress.?PlosONE (IF =3.0).?(Resubmitted on Sept 26, 2017 after a revision on Sept 26, 2017)

4、Tingting Lu, Lulu Liu, Minjing Wei, Yingying Liu, Zianshang Qu, Chuanping Yang, Hairong Wei* & Zhigang Wei* The Effect of Poplar PsnGS1.2 Overexpression on Growth and Secondary Cell Wall and Fibre Characteristics in Tobacco. Frontier of Plant Science (IF=3.9).?(Re-submitted on Oct 12, 2017 after revision)

5、Ting Peng, Mengmeng Qiao, Haiping Liu, Sachin Teotia, Yafan Zhao, Dongjie Zhao, Lina Shi, Brandon Le, Kestrel Rogers, Chathura Gunasekara, Haitang Duan, Yiyou Gu, Lei Tian, Zhanhui Zhang, Fanrong Meng, Lan Huang, Qinghui Chen, Zhenlin Wang, Jinshan Tang, Xiaoqing Tang, Hairong Wei*, Xuemei Chen*, Quanzhi Zhao*, Guiliang Tang*.?A Resource for Inactivation of microRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants. Molecular Plant (IF =8.8) (Reviewed and under a revision)

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部门授權專利及著作：

1、Ji, X. S. Chen, J. Li, W. Deng, Z. Wei and H. Wei*.?2017.?SSGA and MSGA: two seed-growing algorithms for constructing collaborative subnetworks. Scientific Reports. 7:1446, DOI:10.1038/s41598-017-01556-z (IF=5.3).

2、Liu, Y., M. Wei, C. Hou, T. Lu, L. Liu, H. Wei, Y. Cheng and Z. Wei. 2017.?Functional characterization of Populus PsnSHN2 in coordinate regulation secondary wall components in tobacco. Scientific Reports 7(1):42. doi: 10.1038/s41598-017-00093-z. (IF=5.3).

3、Mitchell, C.L., C.E. Latuszek, K. R. Vogel, I. M. Greenlund, R. E. Hobmeier, O. K. Ingram, S. R. Dufek, J. L. Pecore, F. R. Nip, Z. J. Johnson, X. Ji, H. Wei, O. Gailing, and T. Werner.?2017. α-amanitin resistance in Drosophila melanogaster: a genome-wide association approach. PloS ONE.?12(2): e0173162. doi:10.1371/journal.pone.0173162. (IF=3.23).

4、Deng, W., K, Zhang, V. Busov an H. Wei*. 2017.?Recursive random forest algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways. PloS ONE??12(2):e0171532.?DOI:10.1371/journal.pone.0171532. (Correspondence author) (IF=3.23).

5、Ma, H., Weber, G.M., Wei, H., and Yao, J. ??2016. Identification of mitochondrial genome-encoded small RNAs related to egg deterioration caused by post-ovulatory aging in rainbow trout.?Marine Biotechnology 18(5): 584-597 (IF=3.27).

6、Dash, M, Y. Yordan, S. Kumari, T. Georgieva, H. Wei and V. Busov.?2016. A network of genes associated with poplar root development in response to low nitrogen. Plant Signaling & Behavior 11(8):e1214792.

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??????????????????????????????????????????????????????2018年5月22日